Upcoming events
june
10jun12:45 pm4:25 pmSPSP Annual Meeting 2025Click here for more details!
Event Details
The SPSP Annual Meeting is the annual gathering of the SPSP Community, with updates on the platform and lots of interesting discussions on future projects, possibilites and extensions.
Event Details
The SPSP Annual Meeting is the annual gathering of the SPSP Community, with updates on the platform and lots of interesting discussions on future projects, possibilites and extensions. Come share your thoughts with us!
AGENDA
General
- 13h00-13h05: Welcome (Adrian Egli, UZH)
- 13h05-13h20: SPSP overview and general updates (2024-2025) (Aitana Neves, SIB)
- 13h20-13h30: SPSP demos (Dillenn Terumalai and Maria José Ojeda, SIB)
- 13h30-13h45: SPSP bioinformatics (Tim Roloff, UZH and Ivan Topolsky, ETHZ & SIB)
National and international initiatives (eventually) using SPSP data
(10min talk + 5min questions)
- 13h45-14h00: FOPH: NASURE (Digisanté), the future of DATA Platform for the communicable diseases (Klavs Renerts, FOPH)
- 14h00-14h15: Swiss data into the EFSA NGS system (Mirko Rossi, EFSA (remotely))
- 14h15-14h30: Pathoplexus (Emma Hodcroft, Swiss-TPH)
14h30-15h00: Coffee break
Initiatives and data of interest to SPSP
(10min talks followed by panel discussion)
- 15h00-15h10: FOPH: The use of genomic data for communicable diseases (Carolina Agop Nersesian, FOPH)
- 15h10-15h20: The Swissnoso perspective on hospital needs (Sarah Tschudin Sutter, USB)
- 15h20-15h30: Agroscope’s perspective on pathogen genomic data (Jörg Hummerjohann and Elisabet Marti, Agroscope)
- 15h30-15h40: Human Circovirus Hepatitis in an Immunocompromised Patient – a case for SPSP (Michael Huber, UZH)
- 15h40-16h10: Panel discussion (all speakers of the session)
Conclusion
- 16h10-16h25: Closing remarks (Adrian Egli and Aitana Neves)
Time
June 10, 2025 12:45 pm - 4:25 pm(GMT+02:00)
REGISTRATION
Registration is free but mandatory for logistical purposes by 5 June. Thank you!
Register now!Organizer
Past years events
june
07jun1:00 pm5:00 pmSPSP Annual Meeting 2024
Event Details
The SPSP Annual Meeting is the annual gathering of the SPSP Community, with updates on the platform and lots of interesting discussions on future projects, possibilites and extensions.
Event Details
The SPSP Annual Meeting is the annual gathering of the SPSP Community, with updates on the platform and lots of interesting discussions on future projects, possibilites and extensions. Come share your thoughts with us! PDF Program available here.
AGENDA
13h00-13h15: Coffee
13h15-13h20: Welcome (Adrian Egli)
13h20-13h35: SPSP general updates (2023-2024) (Aitana Neves)
13h35-13h50: SPSP ethical and legal framework: status update (Mathilde Heusghem, Aneta Kralova)
13h50-14h40: Research projects and data of interest to SPSP:
-
- National genomic surveillance of multi-resistant bacteria: example of VRE clone ST61. What could have been done with SPSP ? (Dominique Blanc, 8+2min)
- C. diphtheriae: ongoing analysis of transmission in vulnerable populations (Peter Keller, 8+2min)
- SwissLegio (Daniel Mausezahl, Valeria Gaia, 8+2min)
- ESBL-E. coli wastewater analyses (Sheena Conforti, 8+2min)
- SPHN IICU (Adrian Egli, 8+2min)
14h40-14h55: Coffee break
14h55-15h35: Bioinformatics and technologies of interest to SPSP
-
- IMMense bioinformatics workflow (Tim Roloff, 8+2min)
- Oxford Nanopore sequencing for Listeria monocytogenes outbreak surveillance (Michael Biggel, 8+2min)
- Spatiotemporal clustering and genomic analyses: SARS-CoV-2 use case (Yangji Choi, 8+2min)
- Retrospective Genotyping of Enteroviruses Using a Diagnostic Nanopore Sequencing Workflow (Verena Kufner, 8+2min)
15h35-15h55: Open discussion and closing remarks (Adrian Egli)
Time
June 7, 2024 1:00 pm - 5:00 pm(GMT+02:00)